Giriş 1'deki sayıları kullanarak belirli bir dizeyi giriş 2'den nasıl çıkaracağınızı bulmakta sorun yaşıyorum. Dna/query dizisindeki tüm temelleri ayıklamaya çalışıyorum. Konu kimliği FO203509.1'de hizalanmış DEĞİLDİR. Yani, 1057-2381'den itibaren, esasen, blast dosyası girdisi 1'e baktığınız zaman her şey. Q.start, sekansın sorgu dizisi dosyası input2'de başladığı yerdir ve q.end, bittiği yerdir.Dize (hizalanmamış sıra) dilimleme
Giriş 1: | AJ000012
emb sorgu dizisi dosyası: Blast rapor dosyası
Giriş 2 (kopyalamak ve kusura yapıştırmak-biçimlendirmeyi tüm yanlış).1 | Mycobacterium tuberculosis recA geni (suş Canetti) CGAAAGGTCAGATCCGGGCCGGTGAGCACGCCGGATCCGGCCAGGCTAGCGGTGTTCAGCAGATCGTCGG TGATCCGGACCAGCCGCGCACGCAAGTCGGGCCGCACCGCCGCCAGGGCGTTCGACGCGCCGACGAGCGC GGACGCGATGTTGCCACACGCGGCGTGTCACACTTGAATCGAACAGGTGTTCGGCTACTGTGGTGATCAT TCGGAGCAGCCGACTTGTCAGTGGCTGTCTCTAGTGTCACGGCCAACCGACCGATACCGGTCAATCGAAC ACCGACCACAGGAGAGGCACCATGACGCAGACCCCCGATCGGGAAAAGGCGCTCGAGCTGGCAGTGGCCC AGATCGAGAAGAGTTACGGCAAAGGTTCGGTGATGCGCCTCGGCGACGAGGCGCGTCAGCCGATTTCGGT CATTCCGACCGGATCCATCGCACTCGACGTGGCCCTGGGCATTGGCGGCCTGCCGCGTGGCCGGGTGATA GAGATATACGGCCCGGAATCTTCGGGTAAGACCACCGTGGCGCTGCACGCGGTGGCCAACGCTCAGGCCG CCGGTGGTGTTGCGGCGTTCATCGACGCCGAGCACGCGCTGGATCCGGACTATGCCAAGAAGCTCGGTGT CGACACCGATTCGCTGCTGGTCAGCCAGCCGGACACCGGGGAACAGGCACTCGAGATCGCCGACATGCTG ATCCGCTCGGGTGCGCTTGACATCGTGGTGATCGACTCGGTGGCGGCGCTGGTGCCGCGCGCGGAGCTCG AAGGCGAGATGGGCGACAGCCACGTCGGGCTGCAGGCCCGGCTGATGAGCCAGGCGCTGCGGAAAATGAC CGGCGCGCTGAATAATTCGGGCACCACGGCGATCTTCATCAACCAGCTCCGCGACAAGATCGGAGTGATG TTCGGGTCGCCCGAGACGACAACGGGCGGAAAGGCGTTGAAGTTCTACGCGTCGGTGCGCATGGACGTGC GGCGGGTCGAGACGCTCAAGGACGGTACCAACGCGGTCGGCAACCGCACCCGGGTCAAGGTCGTCAAGAA CAAGTGCCTCGCAGAGGGCACTCGGATCTTCGATCCGGTCACCGGTACAACGCATCGCATCGAGGATGTT GTCGATGGGCGCAAGCCTATTCATGTCGTGGCTGCCGCCAAGGACGGAACGCTGCATGCGCGGCCCGTGG TGTCCTGGTTCGACCAGGGAACGCAGGATGTGATCGGGTTGCGGATCGCCGGTGGCGCCATCGTGTGGGC GACACCCGATCACAAGGTGCTGACAGAGTACGGCTGGCGTGCCGCCGGGGAACTCCGCAA GGGAGACCGG GTGGCGCAACCGCGACGCTTCGACGGATTCGGTGACAGTGCGCCGATTCCGGCGGATCATGCCCGGCTGC TTGGCTACCTGATCGGAGATGGCAGGGATGGTTGGGTGGGGGGCAAGACTCCGATCAACTTCATCAATGT TCAGCGGGCGCTCATTGACGACGTGACGCGAATCGCTGCGACGCTCGGTTGTGCGGCCCATCCGCAGGGG CGTATCTCACTCGCGATCGCTCATCGACCCGGTGAGCGCAACGGGGTACTGGACCTTTGTCGGCGGGCCG GTGTGCACGGCAAGCTCGCGTGGGAGAAGACGATTCCGAATTGGTTCTTCGAGCCGGACATCGCGGCCGA CATTGTCGGCAATCTGCTCTTCGGCCTGTTCGAAAGCGACGGGTGGGTGAGCCGGGAACAGACCGGGGCA CTTCGGGTCGGTTACACGACGACCTCTGAACAACTCGCGCATCAGATTCATTGGCTGCTGCTGCGGTTCG GTGTCGGGAGCACCGTTCGAGATTACGATCCGACCCAGAAGCGGCCGAGCATCGTCAACGGTCGACGGAT CCAGAGCAAACGTCAAGTGTTCGAGGTCCGGATCTCGGGTATGGATAACGTCACGGCATTCGCGGAGTCA GTTCCCATGTGGGGGCCGCGCGGTGCCGCG CTTATCCAGGCGATTCCAGAAGCCACGCAGGGGCGGCGTC GTGGATCGCAAGCGACATATCTGGCTGCAGAGATGACCGATGCCGTGCTGAATTATCTGGACGAGCGCGG CGTGACCGCGCAGGAGGCCGCGGCCATGATCGGTGTAGCTTCCGGGGACCCCCGCGGTGGAATGAAGCAG GTCTTAGGTGCCAGCCGCCTTCGTCGGGATCGCGTGCAGGCGCTCGCGGATGCCCTGGATGACAAATTCC TGCACGACATGCTGGCGGAAGAACTCCGGTATTCGGTGATCCGAGAAGTGCTGCCAACGCGGCGGGCACG AACGTTCGACCTCGAGGTCGAGGAACTGCACACCCTCGTCGCCGAAGGGGTTGTCGTGCACAACTGTTCG CCCCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCAAGGGAATCAGCAGGGAGGGCTCGCTGATCG ACATGGGTGTGGATCAGGGCCTCATCCGCAAGTCGGGTGCCTGGTTCACCTACGAGGGCGAGCAGCTCGG CCAGGGCAAGGAGAATGCCCGCAACTTCTTGGTGGAGAACGCCGACGTGGCTGACGAGATCGAGAAGAAG ATCAAGGAAAAGCTTGGCATTGGTGCCGTGGTGACCGATGACCCCTCAAATGACGGTGTCCTGCCCGCCC CCGTCGACTTCTGAGCGCGAAGAGCAGGCGCGGGCACTGTGCCTGCGCCTGCTCACCGCGCGATCCCGCA CCCGCGC
Kodum:
input_1=open('blastreport', 'r')
input_2=open('queryseq', 'r')
def slice_sequence(input1,input2):
for line in input1:
if not line.startswith('#'):
list = line.split()
q_start=int(list[6])
q_end=int(list[7])
if list[1]=='FO203509.1':
for line in input2:
next(input2)
string=''.join(row.strip() for row in input2)
answer=string[q_end:]+string[:q_start]
return answer
ans=slice_sequence(input_1, input_2)
print(ans)
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